Transcript: LINC02045:3

Basic information

LNCipedia transcript ID: LINC02045:3 
HGNC Gene Symbol: LINC02045    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2045
Ensembl Gene ID: ENSG00000243347
Ensembl Transcript ID: ENST00000460324
Location (hg38): chr3:148195729-148280098
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 679 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005842; ENST00000460324; ENST00000460324.1; RP11-501O2.4-001; OTTHUMT00000355815.1; NONHSAT092601
Alternative gene names: XLOC_003275; linc-ZIC4-3; ENSG00000243347; RP11-501O2.4; ENSG00000243347.1; OTTHUMG00000159504.1; LINC02045


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.1338 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02045:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HLTF-2:1
3.1 lnc-HLTF-3:1
4.0 lnc-HLTF-3:1
4.1 lnc-HLTF-3:1
5.0 lnc-HLTF-3:1
5.1 LINC02045:2
5.2 LINC02045:3