Transcript: LINC02052:20

Basic information

LNCipedia transcript ID: LINC02052:20 
HGNC Gene Symbol: LINC02052    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2052
Ensembl Gene ID: ENSG00000224406
Ensembl Transcript ID: ENST00000427474
Location (hg38): chr3:186454982-186456036
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 368 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427474; TCONS_00005905; ENST00000427474.1; RP11-48F14.1-004; OTTHUMT00000344806.1; NONHSAT093820
Alternative gene names: ENSG00000224406; XLOC_003358; linc-DGKG; RP11-48F14.1; ENSG00000224406.1; OTTHUMG00000156618.1; ENSG00000224406.5; LINC02052


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.9321 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02052:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYGS-1:7
3.1 lnc-CRYGS-1:7
4.0 lnc-CRYGS-1:7
4.1 lnc-CRYGS-1:7
5.0 lnc-CRYGS-1:7
5.1 LINC02052:10
5.2 LINC02052:20