Transcript: LINC02053:13

Basic information

LNCipedia transcript ID: LINC02053:13 
HGNC Gene Symbol: LINC02053    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2053
Ensembl Gene ID: ENSG00000241696
Ensembl Transcript ID: ENST00000464537
Location (hg38): chr3:180414212-180422380
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005668; ENST00000464537; ENST00000464537.1; RP11-420J11.2-002; OTTHUMT00000349802.1; NONHSAT093434
Alternative gene names: XLOC_002937; linc-TTC14; ENSG00000241696; RP11-420J11.2; ENSG00000241696.1; OTTHUMG00000157863.1; LINC02053


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.0897 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02053:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC14-1:4
3.1 lnc-TTC14-2:4
4.0 lnc-TTC14-2:4
4.1 lnc-TTC14-2:4
5.0 lnc-TTC14-2:4
5.1 LINC02053:7
5.2 LINC02053:13