Transcript: LINC02057:5

Basic information

LNCipedia transcript ID: LINC02057:5 
HGNC Gene Symbol: LINC02057    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2057
Ensembl Gene ID: ENSG00000249279
Ensembl Transcript ID: ENST00000511794
Location (hg38): chr5:61201309-61252889
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 577 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511794.1; CTC-436P18.3-001; OTTHUMT00000368081.1; NONHSAT101663; ENST00000511794.5
Alternative gene names: ENSG00000249279.1; CTC-436P18.3; OTTHUMG00000162244.1; ENSG00000249279.5; LINC02057


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -233.5466 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02057:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf43-1:2
4.0 lnc-C5orf43-1:2
4.1 lnc-C5orf43-1:2
5.0 lnc-C5orf43-1:2
5.1 LINC02057:3
5.2 LINC02057:5