Transcript: LINC02072:3

Basic information

LNCipedia transcript ID: LINC02072:3 
HGNC Gene Symbol: LINC02072    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2072
Ensembl Gene ID: ENSG00000225860
Ensembl Transcript ID: ENST00000441895
RefSeq ID: NR_122104
Location (hg38): chr17:51336715-51342571
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2645 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025124; ENST00000441895; ENST00000441895.2; RP11-1018N14.2-001; OTTHUMT00000368659.1; NONHSAT054757; NR_122104; NR_122104.1
Alternative gene names: XLOC_012250; linc-KIF2B-4; ENSG00000225860; RP11-1018N14.2; ENSG00000225860.2; OTTHUMG00000162374.1; LINC02072; LOC440446


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.2807 non-coding 
CPAT coding probability 58.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02072:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UTP18-3:1
3.1 lnc-UTP18-3:1
4.0 lnc-UTP18-3:1
4.1 lnc-UTP18-3:1
5.0 lnc-UTP18-3:1
5.1 LINC02072:2
5.2 LINC02072:3