Transcript: LINC02075:3

Basic information

LNCipedia transcript ID: LINC02075:3 
HGNC Gene Symbol: LINC02075    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2075
Ensembl Gene ID: ENSG00000249497
Ensembl Transcript ID: ENST00000509950
RefSeq ID: NR_110805
Location (hg38): chr17:49457861-49461749
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1754 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025144; ENST00000509950; ENST00000509950.1; RP11-1079K10.5-001; OTTHUMT00000365149.1; NONHSAT054540; NR_110805; NR_110805.1
Alternative gene names: XLOC_012506; linc-PHB-1; ENSG00000249497; RP11-1079K10.5; ENSG00000249497.1; OTTHUMG00000161494.1; LINC02075; LOC101927207


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.6135 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02075:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHB-1:1
3.1 lnc-PHB-1:1
4.0 lnc-PHB-1:1
4.1 lnc-PHB-1:1
5.0 lnc-PHB-1:1
5.1 LINC02075:2
5.2 LINC02075:3