Transcript: LINC02080:5

Basic information

LNCipedia transcript ID: LINC02080:5 
LNCipedia gene ID: LINC02080
Location (hg38): chr17:76799044-76805953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2270 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT056089; ENST00000585863.1
Alternative gene names: ENSG00000267065.1; CTD-2246P4.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.1726 non-coding 
CPAT coding probability 15.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02080:5 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MFSD11-4:1
4.0 lnc-MFSD11-2:3
4.1 lnc-MFSD11-2:3
5.0 lnc-MFSD11-2:3
5.1 LINC02080:2
5.2 LINC02080:5