Transcript: LINC02080:6

Basic information

LNCipedia transcript ID: LINC02080:6 
HGNC Gene Symbol: LINC02080    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2080
Ensembl Gene ID: ENSG00000267065
Ensembl Transcript ID: ENST00000585863
RefSeq ID: NR_110837
Location (hg38): chr17:76799044-76807102
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3085 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110837; ENST00000585863.2; NR_110837.1
Alternative gene names: ENSG00000267065.2; CTD-2246P4.1; LINC02080; LOC101928514


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 53.7428 non-coding 
CPAT coding probability 13.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02080:6 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MFSD11-2:2
4.0 lnc-MFSD11-2:2
4.1 lnc-MFSD11-2:2
5.0 lnc-MFSD11-2:2
5.1 LINC02080:3
5.2 LINC02080:6