Transcript: LINC02081:27

Basic information

LNCipedia transcript ID: LINC02081:27 
HGNC Gene Symbol: LINC02081    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2081
Ensembl Gene ID: ENSG00000267123
Ensembl Transcript ID: ENST00000590023
Location (hg38): chr17:78617389-78630170
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 501 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT056237; ENST00000590023.1; ENST00000590023.5
Alternative gene names: ENSG00000267123.1; CTD-2357A8.3; ENSG00000267123.5; LINC02081


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.5442 non-coding 
CPAT coding probability 7.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02081:27 no no no no

Available literature

  1. Fu (2017), Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis., PLoS ONE
  2. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAH17-1:5
4.0 lnc-DNAH17-1:5
4.1 lnc-DNAH17-1:5
5.0 lnc-DNAH17-1:5
5.1 LINC02081:13
5.2 LINC02081:27