Transcript: LINC02081:28

Basic information

LNCipedia transcript ID: LINC02081:28 
LNCipedia gene ID: LINC02081
Location (hg38): chr17:78617409-78619559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1636 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025772; NONHSAT056238
Alternative gene names: XLOC_012582; linc-DNAH17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.6325 non-coding 
CPAT coding probability 22.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02081:28 no no no no

Available literature

  1. Fu (2017), Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis., PLoS ONE
  2. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAH17-1:1
3.1 lnc-DNAH17-1:1
4.0 lnc-DNAH17-1:1
4.1 lnc-DNAH17-1:1
5.0 lnc-DNAH17-1:1
5.1 LINC02081:14
5.2 LINC02081:28