Transcript: LINC02083:3

Basic information

LNCipedia transcript ID: LINC02083:3 
HGNC Gene Symbol: LINC02083    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2083
Ensembl Gene ID: ENSG00000243012
Ensembl Transcript ID: ENST00000462835
Location (hg38): chr3:153431856-153443531
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 515 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005629; ENST00000462835; ENST00000462835.1; RP11-292E2.4-001; OTTHUMT00000356569.1; NONHSAT092785
Alternative gene names: XLOC_002883; linc-C3orf79-1; ENSG00000243012; RP11-292E2.4; ENSG00000243012.1; OTTHUMG00000159628.1; LINC02083


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3502 non-coding 
CPAT coding probability 18.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02083:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C3orf79-1:1
3.1 lnc-C3orf79-1:1
4.0 lnc-C3orf79-1:1
4.1 lnc-C3orf79-1:1
5.0 lnc-C3orf79-1:1
5.1 LINC02083:2
5.2 LINC02083:3