Transcript: LINC02085:9

Basic information

LNCipedia transcript ID: LINC02085:9 
LNCipedia gene ID: LINC02085
Ensembl Gene ID: ENSG00000241280
Ensembl Transcript ID: ENST00000483840
Location (hg38): chr3:101960358-101997926
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1888 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005562; ENST00000483840; ENST00000483840.1; RP11-221J22.2-001; OTTHUMT00000354027.3; NONHSAT090922
Alternative gene names: XLOC_002741; linc-ZPLD1; ENSG00000241280; RP11-221J22.2; ENSG00000241280.1; OTTHUMG00000159237.3; AC106712.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1447 non-coding 
CPAT coding probability 6.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02085:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NFKBIZ-1:2
3.1 lnc-NFKBIZ-1:2
4.0 lnc-NFKBIZ-1:2
4.1 lnc-NFKBIZ-1:2
5.0 lnc-NFKBIZ-1:2
5.1 LINC02085:4
5.2 LINC02085:9