Transcript: LINC02086:16

Basic information

LNCipedia transcript ID: LINC02086:16 
LNCipedia gene ID: LINC02086
Location (hg38): chr17:48683367-48704482
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 618 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000575202.1; CTD-2377D24.8-001; OTTHUMT00000440736.1; NONHSAT054465
Alternative gene names: ENSG00000262745.1; CTD-2377D24.8; OTTHUMG00000178141.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6188 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02086:16 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCOCO2-4:1
4.0 lnc-CALCOCO2-3:8
4.1 lnc-CALCOCO2-3:8
5.0 lnc-CALCOCO2-3:8
5.1 LINC02086:6
5.2 LINC02086:16