Transcript: LINC02086:18

Basic information

LNCipedia transcript ID: LINC02086:18 
LNCipedia gene ID: LINC02086
Location (hg38): chr17:48700616-48704293
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025417; NONHSAT054467
Alternative gene names: XLOC_012226; linc-CALCOCO2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6188 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02086:18 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALCOCO2-2:1
3.1 lnc-CALCOCO2-4:2
4.0 lnc-CALCOCO2-3:10
4.1 lnc-CALCOCO2-3:10
5.0 lnc-CALCOCO2-3:10
5.1 LINC02086:8
5.2 LINC02086:18