Transcript: LINC02086:19

Basic information

LNCipedia transcript ID: LINC02086:19 
LNCipedia gene ID: LINC02086
Location (hg38): chr17:48704998-48706330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 958 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000492522.2
Alternative gene names: ENSG00000244649.2; CTD-2377D24.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.1393 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02086:19 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCOCO2-3:3
4.0 lnc-CALCOCO2-3:3
4.1 lnc-CALCOCO2-3:3
5.0 lnc-CALCOCO2-3:3
5.1 LINC02086:9
5.2 LINC02086:19