Transcript: LINC02086:21

Basic information

LNCipedia transcript ID: LINC02086:21 
LNCipedia gene ID: LINC02086
Location (hg38): chr17:48705261-48706330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 695 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00025176; ENST00000492522; ENST00000492522.1; CTD-2377D24.6-002; OTTHUMT00000358096.1; NONHSAT054469
Alternative gene names: XLOC_012227; linc-CALCOCO2-2; ENSG00000244649; CTD-2377D24.6; ENSG00000244649.1; OTTHUMG00000159905.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.1393 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02086:21 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALCOCO2-1:2
3.1 lnc-CALCOCO2-3:2
4.0 lnc-CALCOCO2-3:2
4.1 lnc-CALCOCO2-3:2
5.0 lnc-CALCOCO2-3:2
5.1 LINC02086:11
5.2 LINC02086:21