Transcript: LINC02088:5

Basic information

LNCipedia transcript ID: LINC02088:5 
HGNC Gene Symbol: LINC02088    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2088
Ensembl Gene ID: ENSG00000227685
Ensembl Transcript ID: ENST00000428134
Location (hg38): chr17:20612912-20633234
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 620 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428134.1; AC087499.10-001; OTTHUMT00000132426.1; NONHSAT146827
Alternative gene names: ENSG00000227685.1; AC087499.10; OTTHUMG00000059551.1; LINC02088


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.8252 non-coding 
CPAT coding probability 62.39% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02088:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LGALS9B-3:1
4.0 lnc-LGALS9B-3:1
4.1 lnc-LGALS9B-3:1
5.0 lnc-LGALS9B-3:1
5.1 LINC02088:3
5.2 LINC02088:5