Transcript: LINC02090:3

Basic information

LNCipedia transcript ID: LINC02090:3 
HGNC Gene Symbol: LINC02090    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2090
Ensembl Gene ID: ENSG00000230969
Ensembl Transcript ID: ENST00000419151
Location (hg38): chr17:16988329-16990177
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 400 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT146033; ENST00000419151.2
Alternative gene names: ENSG00000230969.2; AC104024.2; LINC02090


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.4101 non-coding 
CPAT coding probability 15.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02090:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC104024.2.1-2:1
4.0 lnc-AC104024.2.1-2:1
4.1 lnc-AC104024.2.1-2:1
5.0 lnc-AC104024.2.1-2:1
5.1 LINC02090:2
5.2 LINC02090:3