Transcript: LINC02097:4

Basic information

LNCipedia transcript ID: LINC02097:4 
HGNC Gene Symbol: LINC02097    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2097
Ensembl Gene ID: ENSG00000226101
Ensembl Transcript ID: ENST00000419257
RefSeq ID: NR_110827
Location (hg38): chr17:72072333-72093481
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2063 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025197; ENST00000419257; ENST00000419257.1; AC007461.2-001; OTTHUMT00000255303.1; NONHSAT055656; NR_110827; NR_110827.1
Alternative gene names: XLOC_012300; linc-SOX9-1; ENSG00000226101; AC007461.2; ENSG00000226101.1; OTTHUMG00000132235.1; LINC02097; LOC101928205


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.9029 non-coding 
CPAT coding probability 5.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02097:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX9-1:1
3.1 lnc-SOX9-1:1
4.0 lnc-SOX9-1:1
4.1 lnc-SOX9-1:1
5.0 lnc-SOX9-1:1
5.1 LINC02097:2
5.2 LINC02097:4