Transcript: LINC02099:10

Basic information

LNCipedia transcript ID: LINC02099:10 
HGNC Gene Symbol: LINC02099    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2099
Ensembl Gene ID: ENSG00000253490
Ensembl Transcript ID: ENST00000522158
RefSeq ID: NR_125816
Location (hg38): chr8:29748309-29752297
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2980 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000522158; ENST00000522158.1; AC145110.1-003; OTTHUMT00000375649.1; NONHSAT125827; NR_125816.1
Alternative gene names: ENSG00000253490; AC145110.1; ENSG00000253490.1; OTTHUMG00000163801.2; ENSG00000253490.5; LINC02099; LOC101929450


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.7702 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02099:10 no no no no

Available literature

  1. Wu (2016), Tissue-specific Co-expression of Long Non-coding and Coding RNAs Associated with Breast Cancer., Sci Rep
  2. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LEPROTL1-4:1
3.1 lnc-LEPROTL1-4:1
4.0 lnc-LEPROTL1-4:1
4.1 lnc-LEPROTL1-4:1
5.0 lnc-LEPROTL1-4:1
5.1 LINC02099:2
5.2 LINC02099:10