Transcript: LINC02100:19

Basic information

LNCipedia transcript ID: LINC02100:19 
LNCipedia gene ID: LINC02100
Location (hg38): chr5:18717371-18746202
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 16056 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248693.1|MICT00000279551.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.1937 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02100:19 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CDH18-5:5
5.0 lnc-CDH18-5:5
5.1 LINC02100:3
5.2 LINC02100:19