Transcript: LINC02100:27

Basic information

LNCipedia transcript ID: LINC02100:27 
LNCipedia gene ID: LINC02100
Location (hg38): chr5:18514858-18746061
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3191 bp
Exons: 9
Sources: NONCODE v4
Alternative transcript names: NONHSAT100671
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3537 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02100:27 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH18-5:2
4.0 lnc-CDH18-5:2
4.1 lnc-CDH18-5:2
5.0 lnc-CDH18-5:2
5.1 LINC02100:11
5.2 LINC02100:27