Transcript: LINC02101:6

Basic information

LNCipedia transcript ID: LINC02101:6 
LNCipedia gene ID: LINC02101
RefSeq ID: NR_104669
Location (hg38): chr5:58107632-58122341
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1175 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009673; ENST00000505861; ENST00000505861.1; CTD-2037L6.2-001; OTTHUMT00000367831.1; NONHSAT101596; NR_104669; NR_104669.1
Alternative gene names: XLOC_004837; linc-ACTBL2-1; ENSG00000248132; CTD-2037L6.2; ENSG00000248132.1; OTTHUMG00000162196.1; LOC101928569


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.2267 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02101:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLK2-1:1
3.1 lnc-PLK2-1:1
4.0 lnc-PLK2-1:1
4.1 lnc-PLK2-1:1
5.0 lnc-PLK2-1:1
5.1 LINC02101:2
5.2 LINC02101:6