Transcript: LINC02104:19

Basic information

LNCipedia transcript ID: LINC02104:19 
HGNC Gene Symbol: LINC02104    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2104
Ensembl Gene ID: ENSG00000271334
Ensembl Transcript ID: ENST00000604954
RefSeq ID: NR_104632
Location (hg38): chr5:39520431-39524708
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 599 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104632; ENST00000604954.1; ENST00000604954.5; NR_104632.1
Alternative gene names: ENSG00000271334.1; CTD-2078B5.2; ENSG00000271334.5; LINC02104; LOC101926940


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.007 non-coding 
CPAT coding probability 5.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02104:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OSMR-1:4
4.0 lnc-OSMR-1:4
4.1 lnc-OSMR-1:4
5.0 lnc-OSMR-1:4
5.1 LINC02104:9
5.2 LINC02104:19