Transcript: LINC02109:40

Basic information

LNCipedia transcript ID: LINC02109:40 
HGNC Gene Symbol: LINC02109    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2109
Ensembl Gene ID: ENSG00000259786
Ensembl Transcript ID: ENST00000565798
Location (hg38): chr5:29153536-29172358
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 869 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT100845; ENST00000565798.2
Alternative gene names: ENSG00000259786.2; CTD-2118P12.1; ENSG00000259786.6; LINC02109


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.9402 non-coding 
CPAT coding probability 6.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02109:40 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH6-2:22
4.0 lnc-CDH6-2:22
4.1 lnc-CDH6-2:22
5.0 lnc-CDH6-2:22
5.1 LINC02109:13
5.2 LINC02109:40