Transcript: LINC02109:47

Basic information

LNCipedia transcript ID: LINC02109:47 
LNCipedia gene ID: LINC02109
Location (hg38): chr5:29164411-29176933
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010658; NONHSAT100850
Alternative gene names: XLOC_004325; linc-CDH6-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.0749 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02109:47 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH6-2:9
3.1 lnc-CDH6-2:10
4.0 lnc-CDH6-2:10
4.1 lnc-CDH6-2:10
5.0 lnc-CDH6-2:10
5.1 LINC02109:20
5.2 LINC02109:47