Transcript: LINC02109:52

Basic information

LNCipedia transcript ID: LINC02109:52 
LNCipedia gene ID: LINC02109
Location (hg38): chr5:29164411-29176933
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 228 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010656; NONHSAT100853
Alternative gene names: XLOC_004325; linc-CDH6-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.5569 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02109:52 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH6-2:14
3.1 lnc-CDH6-2:14
4.0 lnc-CDH6-2:14
4.1 lnc-CDH6-2:14
5.0 lnc-CDH6-2:14
5.1 LINC02109:25
5.2 LINC02109:52