Transcript: LINC02109:55

Basic information

LNCipedia transcript ID: LINC02109:55 
HGNC Gene Symbol: LINC02109    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2109
Ensembl Gene ID: ENSG00000259786
Ensembl Transcript ID: ENST00000629527
Location (hg38): chr5:29164930-29217115
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 854 bp
Exons: 9
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629527.2
Alternative gene names: ENSG00000259786.6; CTD-2118P12.1; LINC02109


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -26.7248 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02109:55 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CDH6-2:26
4.1 lnc-CDH6-2:26
5.0 lnc-CDH6-2:26
5.1 LINC02109:28
5.2 LINC02109:55