Transcript: LINC02113:5

Basic information

LNCipedia transcript ID: LINC02113:5 
HGNC Gene Symbol: LINC02113    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2113
Ensembl Gene ID: ENSG00000249515
Ensembl Transcript ID: ENST00000510302
Location (hg38): chr5:99549432-99577957
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 336 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510302; ENST00000510302.1; CTD-2151A2.1-001; OTTHUMT00000370347.1; NONHSAT102981
Alternative gene names: ENSG00000249515; CTD-2151A2.1; ENSG00000249515.1; OTTHUMG00000162763.1; LINC02113


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.2819 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02113:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGMB-1:1
3.1 lnc-RGMB-2:1
4.0 lnc-RGMB-2:1
4.1 lnc-RGMB-2:1
5.0 lnc-RGMB-2:1
5.1 LINC02113:3
5.2 LINC02113:5