Transcript: LINC02115:4

Basic information

LNCipedia transcript ID: LINC02115:4 
LNCipedia gene ID: LINC02115
Location (hg38): chr5:103529676-103541985
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00009743; ENST00000503367; ENST00000503367.1; CTD-2193G5.1-001; OTTHUMT00000370381.1; NONHSAT103063
Alternative gene names: XLOC_004944; linc-GIN1-3; ENSG00000248757; CTD-2193G5.1; ENSG00000248757.1; OTTHUMG00000162779.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.4907 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02115:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUDT12-1:1
3.1 lnc-NUDT12-1:1
4.0 lnc-NUDT12-1:1
4.1 lnc-NUDT12-1:1
5.0 lnc-NUDT12-1:1
5.1 LINC02115:2
5.2 LINC02115:4