Transcript: LINC02117:4

Basic information

LNCipedia transcript ID: LINC02117:4 
HGNC Gene Symbol: LINC02117    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2117
Ensembl Gene ID: ENSG00000248539
Ensembl Transcript ID: ENST00000513673
Location (hg38): chr5:37899363-37920869
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009640; ENST00000513673; ENST00000513673.1; CTD-2194L12.2-001; OTTHUMT00000367335.1; NONHSAT101074
Alternative gene names: XLOC_004788; linc-GDNF-2; ENSG00000248539; CTD-2194L12.2; ENSG00000248539.1; OTTHUMG00000162107.1; LINC02117


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.8966 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02117:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GDNF-1:1
3.1 lnc-GDNF-1:1
4.0 lnc-GDNF-1:1
4.1 lnc-GDNF-1:1
5.0 lnc-GDNF-1:1
5.1 LINC02117:2
5.2 LINC02117:4