Transcript: LINC02122:3

Basic information

LNCipedia transcript ID: LINC02122:3 
HGNC Gene Symbol: LINC02122    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2122
Ensembl Gene ID: ENSG00000248474
Ensembl Transcript ID: ENST00000511395
Location (hg38): chr5:74084068-74103216
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 577 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009699; ENST00000511395; ENST00000511395.1; CTD-2292M14.1-001; OTTHUMT00000368993.1; NONHSAT102146
Alternative gene names: XLOC_004884; linc-ANKRA2-4; ENSG00000248474; CTD-2292M14.1; ENSG00000248474.1; OTTHUMG00000162456.1; LINC02122


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.8614 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02122:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRA2-4:1
3.1 lnc-ANKRA2-6:1
4.0 lnc-ANKRA2-6:1
4.1 lnc-ANKRA2-6:1
5.0 lnc-ANKRA2-6:1
5.1 LINC02122:2
5.2 LINC02122:3