Transcript: LINC02123:5

Basic information

LNCipedia transcript ID: LINC02123:5 
HGNC Gene Symbol: LINC02123    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2123
Ensembl Gene ID: ENSG00000250668
Ensembl Transcript ID: ENST00000514869
RefSeq ID: NR_134277
Location (hg38): chr5:7346986-7347977
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 885 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009598; ENST00000514869; ENST00000514869.1; CTD-2296D1.2-001; OTTHUMT00000366352.1; NONHSAT100243; NR_134277.1
Alternative gene names: XLOC_004726; linc-NSUN2-2; ENSG00000250668; CTD-2296D1.2; ENSG00000250668.1; OTTHUMG00000161901.1; LINC02123; LOC101929261


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.247 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02123:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf49-2:2
3.1 lnc-C5orf49-3:2
4.0 lnc-C5orf49-3:2
4.1 lnc-C5orf49-3:2
5.0 lnc-C5orf49-3:2
5.1 LINC02123:3
5.2 LINC02123:5