Transcript: LINC02125:6

Basic information

LNCipedia transcript ID: LINC02125:6 
HGNC Gene Symbol: LINC02125    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2125
Ensembl Gene ID: ENSG00000250514
Ensembl Transcript ID: ENST00000512279
RefSeq ID: NR_110934
Location (hg38): chr16:76634998-76658478
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2198 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000512279; ENST00000512279.1; RP11-96P7.1-001; OTTHUMT00000421972.1; NONHSAT143783; NR_110934; NR_110934.1
Alternative gene names: ENSG00000250514; AC108125.1; ENSG00000250514.1; RP11-96P7.1; OTTHUMG00000173062.1; LINC02125; LOC101928203


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.2557 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02125:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-58C22.1.1-1:1
3.1 lnc-RP11-58C22.1.1-1:1
4.0 lnc-RP11-58C22.1.1-1:1
4.1 lnc-RP11-58C22.1.1-1:1
5.0 lnc-RP11-58C22.1.1-1:1
5.1 LINC02125:2
5.2 LINC02125:6