Transcript: LINC02130:3

Basic information

LNCipedia transcript ID: LINC02130:3 
HGNC Gene Symbol: LINC02130    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2130
Ensembl Gene ID: ENSG00000260009
Ensembl Transcript ID: ENST00000566054
RefSeq ID: NR_131191
Location (hg38): chr16:14363109-14370266
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00024264; ENST00000566054.1; RP11-65J21.1-001; OTTHUMT00000431440.1; NR_131191.1
Alternative gene names: XLOC_011882; linc-CPPED1-4; ENSG00000260009.1; RP11-65J21.1; OTTHUMG00000176060.1; LINC02130; LOC105447648


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.5898 non-coding 
CPAT coding probability 10.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02130:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PARN-2:1
3.1 lnc-PARN-2:1
4.0 lnc-PARN-2:1
4.1 lnc-PARN-2:1
5.0 lnc-PARN-2:1
5.1 LINC02130:2
5.2 LINC02130:3