Transcript: LINC02135:6

Basic information

LNCipedia transcript ID: LINC02135:6 
HGNC Gene Symbol: LINC02135    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2135
Ensembl Gene ID: ENSG00000268532
Ensembl Transcript ID: ENST00000599486
Location (hg38): chr16:86286427-86293389
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2065 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT144187; ENST00000599486.1
Alternative gene names: ENSG00000268532.1; RP11-514D23.1; LINC02135


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.1562 non-coding 
CPAT coding probability 7.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02135:6 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXF1-2:2
4.0 lnc-FOXF1-2:2
4.1 lnc-FOXF1-2:2
5.0 lnc-FOXF1-2:2
5.1 LINC02135:3
5.2 LINC02135:6