Transcript: LINC02135:7

Basic information

LNCipedia transcript ID: LINC02135:7 
LNCipedia gene ID: LINC02135
RefSeq ID: NR_038438
Location (hg38): chr16:86286431-86293389
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2061 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038438; NR_038438.1
Alternative gene names: LOC146513


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.1562 non-coding 
CPAT coding probability 7.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02135:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXF1-2:3
4.0 lnc-FOXF1-2:3
4.1 lnc-FOXF1-2:3
5.0 lnc-FOXF1-2:3
5.1 LINC02135:4
5.2 LINC02135:7