Transcript: LINC02139:11

Basic information

LNCipedia transcript ID: LINC02139:11 
LNCipedia gene ID: LINC02139
Location (hg38): chr16:85145901-85147884
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 481 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024488; NONHSAT144111
Alternative gene names: XLOC_011807; linc-KIAA0182-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.2593 non-coding 
CPAT coding probability 3.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02139:11 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0513-1:4
3.1 lnc-KIAA0513-1:4
4.0 lnc-KIAA0513-1:4
4.1 lnc-KIAA0513-1:4
5.0 lnc-KIAA0513-1:4
5.1 LINC02139:6
5.2 LINC02139:11