Transcript: LINC02143:9

Basic information

LNCipedia transcript ID: LINC02143:9 
HGNC Gene Symbol: LINC02143    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2143
Ensembl Gene ID: ENSG00000253236
Ensembl Transcript ID: ENST00000519929
RefSeq ID: NR_105064
Location (hg38): chr5:164448422-164467402
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000519929; ENST00000519929.1; CTD-2313P7.1-001; OTTHUMT00000370945.1; NR_105064; NR_105064.1
Alternative gene names: ENSG00000253236; CTD-2313P7.1; ENSG00000253236.1; OTTHUMG00000162886.1; LINC02143; LOC101927835


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -306.9587 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02143:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUDCD2-3:3
3.1 lnc-NUDCD2-5:3
4.0 lnc-NUDCD2-5:3
4.1 lnc-NUDCD2-5:3
5.0 lnc-NUDCD2-5:3
5.1 LINC02143:5
5.2 LINC02143:9