Transcript: LINC02153:34

Basic information

LNCipedia transcript ID: LINC02153:34 
HGNC Gene Symbol: LINC02153    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2153
Ensembl Gene ID: ENSG00000253199
Ensembl Transcript ID: ENST00000522604
RefSeq ID: NR_033894
Location (hg38): chr8:20973986-20995119
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1644 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00014463; ENST00000522604; ENST00000522604.1; RP11-421P23.1-001; OTTHUMT00000375273.1; NONHSAT125422; NR_033894; NR_033894.1
Alternative gene names: XLOC_006734; linc-XPO7-4; ENSG00000253199; RP11-421P23.1; ENSG00000253199.1; OTTHUMG00000163761.1; LINC02153; LOC286114


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.2827 non-coding 
CPAT coding probability 6.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02153:34 no no no no

Available literature

  1. Cui (2016), Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1B2-4:12
3.1 lnc-ATP6V1B2-5:12
4.0 lnc-ATP6V1B2-5:12
4.1 lnc-ATP6V1B2-5:12
5.0 lnc-ATP6V1B2-5:12
5.1 LINC02153:18
5.2 LINC02153:34