Transcript: LINC02154:6

Basic information

LNCipedia transcript ID: LINC02154:6 
LNCipedia gene ID: LINC02154
Location (hg38): chrX:13266047-13303415
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2410 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT136290
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0649 non-coding 
CPAT coding probability 23.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02154:6 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN3L-1:3
4.0 lnc-ATXN3L-1:3
4.1 lnc-ATXN3L-1:3
5.0 lnc-ATXN3L-1:3
5.1 LINC02154:3
5.2 LINC02154:6