Transcript: LINC02154:7

Basic information

LNCipedia transcript ID: LINC02154:7 
HGNC Gene Symbol: LINC02154    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2154
Ensembl Gene ID: ENSG00000235385
Ensembl Transcript ID: ENST00000412485
Location (hg38): chrX:13266048-13303392
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1497 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017040; ENST00000412485; ENST00000412485.1; GS1-600G8.5-001; OTTHUMT00000055788.1; NONHSAT136291
Alternative gene names: XLOC_008115; linc-FAM9C-2; ENSG00000235385; GS1-600G8.5; ENSG00000235385.1; OTTHUMG00000021149.2; LINC02154


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.6659 non-coding 
CPAT coding probability 23.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02154:7 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATXN3L-1:2
3.1 lnc-ATXN3L-1:2
4.0 lnc-ATXN3L-1:2
4.1 lnc-ATXN3L-1:2
5.0 lnc-ATXN3L-1:2
5.1 LINC02154:4
5.2 LINC02154:7