Transcript: LINC02160:3

Basic information

LNCipedia transcript ID: LINC02160:3 
HGNC Gene Symbol: LINC02160    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2160
Ensembl Gene ID: ENSG00000251443
Ensembl Transcript ID: ENST00000503577
Location (hg38): chr5:33229735-33255553
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503577; ENST00000503577.1; RP11-113I22.1-001; OTTHUMT00000366710.1; NONHSAT100947; FPKM1_group_25186_transcript_1
Alternative gene names: ENSG00000251443; RP11-113I22.1; ENSG00000251443.1; OTTHUMG00000162002.1; LINC02160


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.1964 non-coding 
CPAT coding probability 16.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02160:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TARS-1:1
3.1 lnc-TARS-1:1
4.0 lnc-TARS-1:1
4.1 lnc-TARS-1:1
5.0 lnc-TARS-1:1
5.1 LINC02160:2
5.2 LINC02160:3