Transcript: LINC02162:6

Basic information

LNCipedia transcript ID: LINC02162:6 
LNCipedia gene ID: LINC02162
Location (hg38): chr5:3455344-3461402
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 293 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT100127; FPKM1_group_24822_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.5458 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02162:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRX1-1:3
4.0 lnc-IRX1-1:3
4.1 lnc-IRX1-1:3
5.0 lnc-IRX1-1:3
5.1 LINC02162:3
5.2 LINC02162:6