Transcript: LINC02164:3

Basic information

LNCipedia transcript ID: LINC02164:3 
HGNC Gene Symbol: LINC02164    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2164
Ensembl Gene ID: ENSG00000261811
Ensembl Transcript ID: ENST00000566684
Location (hg38): chr16:5215394-5220594
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 272 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566684.1; RP11-382N13.2-001; OTTHUMT00000435403.1; NONHSAT140343
Alternative gene names: ENSG00000261811.1; RP11-382N13.2; OTTHUMG00000177110.1; LINC02164


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.0544 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02164:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM86A-1:1
4.0 lnc-FAM86A-1:1
4.1 lnc-FAM86A-1:1
5.0 lnc-FAM86A-1:1
5.1 LINC02164:2
5.2 LINC02164:3