Transcript: LINC02172:4

Basic information

LNCipedia transcript ID: LINC02172:4 
HGNC Gene Symbol: LINC02172    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2172
Ensembl Gene ID: ENSG00000251632
Ensembl Transcript ID: ENST00000507365
Location (hg38): chr4:137545731-137603430
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2264 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007633; ENST00000507365; ENST00000507365.1; RP11-714L20.1-001; OTTHUMT00000364620.1; NONHSAT098396
Alternative gene names: XLOC_003702; linc-CCRN4L-9; ENSG00000251632; RP11-714L20.1; ENSG00000251632.1; OTTHUMG00000161349.1; LINC02172


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.4701 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02172:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCRN4L-8:1
3.1 lnc-CCRN4L-9:1
4.0 lnc-CCRN4L-9:1
4.1 lnc-CCRN4L-9:1
5.0 lnc-CCRN4L-9:1
5.1 LINC02172:2
5.2 LINC02172:4