Transcript: LINC02174:5

Basic information

LNCipedia transcript ID: LINC02174:5 
HGNC Gene Symbol: LINC02174    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2174
Ensembl Gene ID: ENSG00000249297
Ensembl Transcript ID: ENST00000508977
Location (hg38): chr4:171602683-171638763
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007898; ENST00000508977; ENST00000508977.1; RP11-97E7.2-001; OTTHUMT00000362779.2; NONHSAT099202
Alternative gene names: XLOC_004160; linc-AADAT-2; ENSG00000249297; RP11-97E7.2; ENSG00000249297.1; OTTHUMG00000160881.2; LINC02174


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.3783 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02174:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AADAT-6:2
3.1 lnc-AADAT-6:2
4.0 lnc-AADAT-6:2
4.1 lnc-AADAT-6:2
5.0 lnc-AADAT-6:2
5.1 LINC02174:3
5.2 LINC02174:5