Transcript: LINC02178:3

Basic information

LNCipedia transcript ID: LINC02178:3 
HGNC Gene Symbol: LINC02178    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2178
Ensembl Gene ID: ENSG00000261092
Ensembl Transcript ID: ENST00000566876
Location (hg38): chr16:50390916-50395133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566876.1; RP11-21B23.2-001; OTTHUMT00000422972.1; NONHSAT142409
Alternative gene names: ENSG00000261092.1; RP11-21B23.2; OTTHUMG00000173393.1; LINC02178


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.8685 non-coding 
CPAT coding probability 18.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02178:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRD7-1:1
4.0 lnc-BRD7-1:1
4.1 lnc-BRD7-1:1
5.0 lnc-BRD7-1:1
5.1 LINC02178:2
5.2 LINC02178:3