Transcript: LINC02179:4

Basic information

LNCipedia transcript ID: LINC02179:4 
HGNC Gene Symbol: LINC02179    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2179
Ensembl Gene ID: ENSG00000261623
Ensembl Transcript ID: ENST00000561523
Location (hg38): chr16:49466106-49469875
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3673 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561523.1; RP11-189E14.4-001; OTTHUMT00000423257.2
Alternative gene names: ENSG00000261623.1; RP11-189E14.4; OTTHUMG00000173490.2; LINC02179


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.8672 non-coding 
CPAT coding probability 15.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02179:4 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf78-3:1
4.0 lnc-C16orf78-3:1
4.1 lnc-C16orf78-3:1
5.0 lnc-C16orf78-3:1
5.1 LINC02179:2
5.2 LINC02179:4