Transcript: LINC02179:5

Basic information

LNCipedia transcript ID: LINC02179:5 
LNCipedia gene ID: LINC02179
Location (hg38): chr16:49466106-49469880
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3678 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT142378
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.8672 non-coding 
CPAT coding probability 15.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02179:5 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf78-3:2
4.0 lnc-C16orf78-3:2
4.1 lnc-C16orf78-3:2
5.0 lnc-C16orf78-3:2
5.1 LINC02179:3
5.2 LINC02179:5